Repositories
Some of my projects
$ ls -la ~/github/
sinc-lab/sincFold RNA secondary structure prediction, end to end from the sequence [paper]
sinc-lab/xvalRNAfolding Homology-aware cross-validation for RNA structure prediction [paper]
sinc-lab/rna-llm-folding Benchmark of large language models for RNA secondary structure [paper]
sinc-lab/lncRNA-folding Experimental comparison of long non-coding RNA structure predictors [paper]
sinc-lab/miRe2e Transformer model for pre-miRNA prediction from raw sequence [paper]
sinc-lab/sarscov2-mirna-discovery Pipeline for pre-miRNA discovery in the SARS-CoV-2 genome [paper]
sinc-lab/ET-Pfam Ensemble transfer learning for protein family prediction [paper]
efenoy/GNN2Pfam Graph neural networks over sequence and structure for Pfam annotation [paper]
sinc-lab/emb2dis Intrinsic protein disorder prediction from language model embeddings [paper]
sinc-lab/llm4pfam Protein language model embeddings for Pfam domain annotation [paper]
sinc-lab/transfer-learning-pfam Transfer learning to annotate the protein universe [paper]
lbugnon/deeSOM Deep self-organising maps for highly imbalanced data [paper]
lbugnon/emoHR Dimensional affect recognition from heart rate variability [paper]
lbugnon/AntTracker Computer vision tracking of leaf-cutter ant foraging activity [paper]
lbugnon/kindernet-page Browser app for teaching neural networks in schools
lbugnon/foundation_models_bioinfo Notes and experiments on foundation models for bioinformatics
lbugnon/stereocv Stereo computer vision utilities
lbugnon/soybean_prediction Yield prediction models for soybean crops
lbugnon/SVR Support vector regression implementation